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575 lines
25 KiB
575 lines
25 KiB
<?php |
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/** |
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* Report tracking, storing and viewing functions using the report_results sql table. |
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* |
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* Supports generic tracking, storing and viewing of reports by utilizing a vertical |
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* table entitled report_results. This allows flexible placement of tokens for report |
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* setting etc. Also supports itemization of results (per patient tracking). |
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* <pre>Tokens that are reserved include: |
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* 'bookmark' - Allows bookmarking of a new report id (used to allow tracking |
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* progress via ajax calls). If exist, value is always set to '1'. |
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* 'progress' - Either set to 'pending' or 'complete'. |
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* 'type' - Set to type of report |
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* 'total_items' - Set to total number of items that will be processed (ie. such as patients) |
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* 'progress_items' - Set to number of items (ie. such as patients) |
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* 'data' - Contains the data of the report |
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* 'date_report' - Set to date of the report (date and time) |
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* 'date_report_complete' - Set to date of the report completion (date and time) |
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* </pre> |
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* |
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* Copyright (C) 2012 Brady Miller <brady.g.miller@gmail.com> |
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* |
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* LICENSE: This program is free software; you can redistribute it and/or |
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* modify it under the terms of the GNU General Public License |
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* as published by the Free Software Foundation; either version 2 |
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* of the License, or (at your option) any later version. |
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* This program is distributed in the hope that it will be useful, |
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* but WITHOUT ANY WARRANTY; without even the implied warranty of |
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the |
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* GNU General Public License for more details. |
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* You should have received a copy of the GNU General Public License |
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* along with this program. If not, see <http://opensource.org/licenses/gpl-license.php>;. |
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* |
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* @package OpenEMR |
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* @author Brady Miller <brady.g.miller@gmail.com> |
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* @link http://www.open-emr.org |
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*/ |
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use OpenEMR\Common\Csrf\CsrfUtils; |
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/** |
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* Return listing of report results. |
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* |
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* @param timestamp $start Start of date range |
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* @param timestamp $end End of date range |
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* @return sql-query Listing of report results |
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*/ |
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function listingReportDatabase($start_date = '', $end_date = '') |
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{ |
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// set $end_date to today's date if empty |
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$end_date = ($end_date) ? $end_date : date('Y-m-d H:i:s'); |
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// Collect pertinent information as a pivot table (ie. converting vertical to horizontal row) |
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if (empty($start_date)) { |
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$res = sqlStatement("SELECT *, TIMESTAMPDIFF(MINUTE,pt.date_report,pt.date_report_complete) as `report_time_processing` |
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FROM ( |
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SELECT `report_id`, |
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MAX(if( `field_id` = 'date_report', `field_value`, 0 )) as `date_report`, |
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MAX(if( `field_id` = 'date_report_complete', `field_value`, 0 )) as `date_report_complete`, |
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MAX(if( `field_id` = 'progress', `field_value`, 0 )) as `progress`, |
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MAX(if( `field_id` = 'total_items', `field_value`, 0 )) as `total_items`, |
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MAX(if( `field_id` = 'progress_items', `field_value`, 0 )) as `progress_items`, |
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MAX(if( `field_id` = 'type', `field_value`, 0 )) as `type` |
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FROM `report_results` |
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GROUP BY `report_id` |
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) AS pt |
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WHERE pt.date_report < ? |
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ORDER BY pt.report_id", array($end_date)); |
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} else { |
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$res = sqlStatement("SELECT *, TIMESTAMPDIFF(MINUTE,pt.date_report,pt.date_report_complete) as `report_time_processing` |
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FROM ( |
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SELECT `report_id`, |
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MAX(if( `field_id` = 'date_report', `field_value`, 0 )) as `date_report`, |
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MAX(if( `field_id` = 'date_report_complete', `field_value`, 0 )) as `date_report_complete`, |
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MAX(if( `field_id` = 'progress', `field_value`, 0 )) as `progress`, |
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MAX(if( `field_id` = 'total_items', `field_value`, 0 )) as `total_items`, |
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MAX(if( `field_id` = 'progress_items', `field_value`, 0 )) as `progress_items`, |
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MAX(if( `field_id` = 'type', `field_value`, 0 )) as `type` |
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FROM `report_results` |
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GROUP BY `report_id` |
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) AS pt |
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WHERE pt.date_report > ? AND pt.date_report < ? |
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ORDER BY pt.report_id", array($start_date,$end_date)); |
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} |
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return $res; |
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} |
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/** |
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* Simply reserves a report id for use in the report results tracking/storing/viewing item in database.. |
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* |
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* @return integer Report id that was assigned in database |
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*/ |
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function bookmarkReportDatabase() |
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{ |
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// Retrieve a new report id |
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$query = sqlQuery("SELECT max(`report_id`) as max_report_id FROM `report_results`"); |
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if (empty($query)) { |
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$new_report_id = 1; |
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} else { |
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$new_report_id = $query['max_report_id'] + 1; |
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} |
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// Set the bookmark token |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($new_report_id,"bookmark",1)); |
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return $new_report_id; |
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} |
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/** |
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* Initiate a report results tracking/storing/viewing item in database. |
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* |
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* @param string $type Report type identifier |
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* @param array $fields Array containing pertinent report details (Do NOT use 'bookmark', 'progress','type','progress_patients', 'data', 'date_report' or 'no_json_support' as keys in array; they will be ignored) |
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* @param integer $report_id Report id (if have already bookmarked a report id) |
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* @return integer Report id that is assigned to the report |
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*/ |
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function beginReportDatabase($type, $fields, $report_id = null) |
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{ |
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// Retrieve a new report id, if needed. |
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if (empty($report_id)) { |
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$query = sqlQuery("SELECT max(`report_id`) as max_report_id FROM `report_results`"); |
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if (empty($query)) { |
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$new_report_id = 1; |
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} else { |
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$new_report_id = $query['max_report_id'] + 1; |
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} |
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} else { |
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$new_report_id = $report_id; |
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} |
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// Set the required tokens |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($new_report_id,"progress","pending")); |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($new_report_id,"type",$type)); |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($new_report_id,"progress_items","0")); |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($new_report_id,"data","")); |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($new_report_id,"date_report",date("Y-m-d H:i:s"))); |
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// Set the fields tokens |
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if (!empty($fields)) { |
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foreach ($fields as $key => $value) { |
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// skip the special tokens |
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if ( |
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($key == "type") || |
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($key == "data") || |
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($key == "progress") || |
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($key == "progress_items") || |
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($key == "total_items") || |
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($key == "date_report") || |
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($key == "date_report_complete") || |
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($key == "bookmark") |
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) { |
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continue; |
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} |
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// place the token |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($new_report_id,$key,$value)); |
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} |
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} |
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// Return the report id |
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return $new_report_id; |
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} |
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/** |
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* Insert total items to process in database. |
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* For performance reasons, it is assumed that the total_items does not already exists in current database entry. |
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* |
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* @param integer $report_id Report id |
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* @param integer $total_items Total number of items that will be processed |
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*/ |
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function setTotalItemsReportDatabase($report_id, $total_items) |
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{ |
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// Insert the total items that are to be processed |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($report_id,"total_items",$total_items)); |
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} |
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/** |
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* Update report results in database(basically update number of items (patients) that has been processed in pending reports). |
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* For performance reasons, it is assumed that the progress_items token already exists in current database entry. |
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* |
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* @param integer $report_id Report id |
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* @param integer $items_processed Number of items that have been processed |
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*/ |
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function updateReportDatabase($report_id, $items_processed) |
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{ |
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// Update the items that have been processed |
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sqlStatement("UPDATE `report_results` SET `field_value`=? WHERE `report_id`=? AND `field_id`='progress_items'", array($items_processed,$report_id)); |
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} |
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/** |
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* Store (finished) report results (in json format) in database. |
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* For performance reasons, it is assumed that the data and progress tokens already exists in current database entry. |
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* For performance reasons, it is assumed that the date_report_complete does not already exists in current database entry. |
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* |
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* @param integer $report_id Report id |
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* @param string $data Report results/data |
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*/ |
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function finishReportDatabase($report_id, $data) |
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{ |
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// Record the data |
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sqlStatement("UPDATE `report_results` SET `field_value`=? WHERE `report_id`=? AND `field_id`='data'", array($data,$report_id)); |
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// Record the finish date/time |
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sqlStatement("INSERT INTO `report_results` (`report_id`,`field_id`,`field_value`) VALUES (?,?,?)", array ($report_id,"date_report_complete",date("Y-m-d H:i:s"))); |
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// Set progress to complete |
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sqlStatement("UPDATE `report_results` SET `field_value`='complete' WHERE `report_id`=? AND `field_id`='progress'", array($report_id)); |
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} |
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/** |
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* Collect report results from database. |
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* |
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* @param integer $report_id Report id |
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* @return array Array of id/values for a report |
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*/ |
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function collectReportDatabase($report_id) |
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{ |
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// Collect the rows of data |
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$res = sqlStatement("SELECT * FROM `report_results` WHERE `report_id`=?", array($report_id)); |
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// Convert data into an array |
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$final_array = array(); |
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while ($row = sqlFetchArray($res)) { |
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$final_array = array_merge($final_array, array($row['field_id'] => $row['field_value'])); |
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} |
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return $final_array; |
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} |
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/** |
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* Get status of report from database. |
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* |
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* @param integer $report_id Report id |
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* @return string Status report (PENDING, COMPLETE, or return a string with progress) |
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*/ |
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function getStatusReportDatabase($report_id) |
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{ |
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// Collect the pertinent rows of data |
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$res = sqlStatement("SELECT `field_id`, `field_value` FROM `report_results` WHERE `report_id`=? AND (`field_id`='progress' OR `field_id`='total_items' OR `field_id`='progress_items')", array($report_id)); |
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// If empty, then just return Pending, since stil haven't likely created the entries yet |
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if (sqlNumRows($res) < 1) { |
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return "PENDING"; |
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} |
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// Place into an array for quick processing |
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$final_array = array(); |
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while ($row = sqlFetchArray($res)) { |
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$final_array = array_merge($final_array, array($row['field_id'] => $row['field_value'])); |
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} |
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if ($final_array['progress'] == "complete") { |
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// return COMPLETE |
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return "COMPLETE"; |
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} else { |
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$final_array['progress_items'] = ($final_array['progress_items']) ? $final_array['progress_items'] : 0; |
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return $final_array['progress_items'] . " / " . $final_array['total_items'] . " " . xl("Patients"); |
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} |
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} |
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/** |
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* Insert itemization item into database. |
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* |
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* @param integer $report_id Report id |
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* @param integer $itemized_test_id Itemized test id |
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* @param integer $pass 0 is fail, 1 is pass, 2 is exclude |
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* @param integer $patient_id Patient pid |
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* @param string $numerator_label Numerator label (if applicable) |
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* @param string $rule_id The name of the rule that was used to generate this item |
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* @param string $itemized_details JSON of itemized details about this rule (if applicable) |
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*/ |
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function insertItemReportTracker($report_id, $itemized_test_id, $pass, $patient_id, $numerator_label = '', $rule_id = '', $itemizedDetails = '') |
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{ |
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$sqlParameters = array($report_id,$itemized_test_id,$numerator_label,$pass,$patient_id, $rule_id, $itemizedDetails); |
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sqlStatementCdrEngine("INSERT INTO `report_itemized` (`report_id`,`itemized_test_id`,`numerator_label`,`pass`,`pid`,`rule_id`,`item_details`) VALUES (?,?,?,?,?,?,?)", $sqlParameters); |
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} |
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/** |
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* Collect a rules display title for itemized report. |
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* |
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* @param integer $report_id Report id |
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* @param integer $itemized_test_id Itemized test id |
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* @param integer $numerator_label Numerator label (if applicable) |
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* @return string/boolean Rule title for itemization display (false if nothing found) |
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*/ |
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function collectItemizedRuleDisplayTitle($report_id, $itemized_test_id, $numerator_label = '') |
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{ |
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$dispTitle = ""; |
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$report_view = collectReportDatabase($report_id); |
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$type_report = $report_view['type']; |
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$dataSheet = json_decode($report_view['data'], true); |
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$display_group_provider_info = false; |
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$group_label = ''; |
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$group_provider_label = ''; |
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// for our group calculation reports we want to display the group and the provider label information |
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if ($report_view['provider'] == 'group_calculation') { |
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$display_group_provider_info = true; |
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} |
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foreach ($dataSheet as $row) { |
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if ($display_group_provider_info) { |
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if (isset($row['is_provider_group'])) { |
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$group_label = xlt('Group') . ': ' . text($row['name']) . ' ( ' . xlt('TIN') . ' ' |
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. text($row['federaltaxid']) . ' )'; |
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$group_provider_label = $group_label; |
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} else if (isset($row['is_provider'])) { |
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$provider_label = ' ' . xlt('Provider') . ': ' . text($row['prov_fname']) . ',' . text($row['prov_lname']) |
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. ' ( ' . xlt('NPI') . ' ' . text($row['npi']) . ' ) '; |
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if (isset($row['is_provider_in_group'])) { |
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$group_provider_label = $group_label . ' ' . $provider_label; |
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} else { |
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$group_provider_label = $provider_label; |
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} |
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} |
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} |
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if (isset($row['is_main']) || isset($row['is_sub'])) { |
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if (isset($row['is_main'])) { |
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// Store this |
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$dispTitle = $group_provider_label . ' ' . generate_display_field(array('data_type' => '1','list_id' => 'clinical_rules'), $row['id']); |
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} |
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if (($row['itemized_test_id'] == $itemized_test_id) && (($row['numerator_label'] ?? '') == $numerator_label)) { |
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// We have a hit, build on the $dispTitle created above |
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if (isset($row['is_main'])) { |
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$tempCqmAmcString = ""; |
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if (($type_report == "cqm") || ($type_report == "cqm_2011") || ($type_report == "cqm_2014")) { |
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if (!empty($row['cqm_pqri_code'])) { |
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$tempCqmAmcString .= " " . xlt('PQRI') . ":" . text($row['cqm_pqri_code']) . " "; |
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} |
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if (!empty($row['cqm_nqf_code'])) { |
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$tempCqmAmcString .= " " . xlt('NQF') . ":" . text($row['cqm_nqf_code']) . " "; |
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} |
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} |
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if ($type_report == "amc") { |
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if (!empty($row['amc_code'])) { |
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$tempCqmAmcString .= " " . xlt('AMC-2011') . ":" . text($row['amc_code']) . " "; |
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} |
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if (!empty($row['amc_code_2014'])) { |
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$tempCqmAmcString .= " " . xlt('AMC-2014') . ":" . text($row['amc_code_2014']) . " "; |
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} |
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} |
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if ($type_report == "amc_2011") { |
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if (!empty($row['amc_code'])) { |
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$tempCqmAmcString .= " " . xlt('AMC-2011') . ":" . text($row['amc_code']) . " "; |
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} |
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} |
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if ($type_report == "amc_2014_stage1") { |
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if (!empty($row['amc_code_2014'])) { |
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$tempCqmAmcString .= " " . xlt('AMC-2014 Stage I') . ":" . text($row['amc_code_2014']) . " "; |
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} |
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} |
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if ($type_report == "amc_2014_stage2") { |
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if (!empty($row['amc_code_2014'])) { |
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$tempCqmAmcString .= " " . xlt('AMC-2014 Stage II') . ":" . text($row['amc_code_2014']) . " "; |
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} |
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} |
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if (!empty($tempCqmAmcString)) { |
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$dispTitle .= "(" . $tempCqmAmcString . ")"; |
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} |
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if (!(empty($row['concatenated_label']))) { |
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$dispTitle .= ", " . xlt($row['concatenated_label']) . " "; |
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} |
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} else { // isset($row['is_sub'] |
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$dispTitle .= " - " . generate_display_field(array('data_type' => '1','list_id' => 'rule_action_category'), $row['action_category']); |
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$dispTitle .= ": " . generate_display_field(array('data_type' => '1','list_id' => 'rule_action'), $row['action_item']); |
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} |
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return $dispTitle; |
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} |
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} |
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} |
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return false; |
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} |
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/** |
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* Collect patient listing from CDR reports itemization. |
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* |
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* @param integer $report_id Report id |
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* @param integer $itemized_test_id Itemized test id |
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* @param string $pass options are 'fail', 'pass', 'exclude', 'init_patients', 'exception' and 'all' |
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* @param integer $numerator_label Numerator label (if applicable) |
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* @param integer $sqllimit Sql query pagination info |
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* @param integer $fstart Sql query pagination info |
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* @return array/integer Array list or a count |
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*/ |
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function collectItemizedPatientsCdrReport($report_id, $itemized_test_id, $pass = 'all', $numerator_label = '', $count = false, $sqllimit = 'all', $fstart = 0) |
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{ |
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|
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if ($count) { |
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$given = " COUNT(DISTINCT `patient_data`.`pid`) AS total_listings "; |
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} else { |
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$given = " DISTINCT `patient_data`.*, DATE_FORMAT(`patient_data`.`DOB`,'%m/%d/%Y') as DOB_TS "; |
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} |
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$orderby = " `patient_data`.`lname` ASC, `patient_data`.`fname` ASC "; |
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// set $pass_sql |
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switch ($pass) { |
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case "fail": |
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$pass_sql = 0; |
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break; |
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case "pass": |
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$pass_sql = 1; |
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break; |
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case "exclude": |
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$pass_sql = 2; |
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break; |
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case "init_patients": |
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$pass_sql = 3; |
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break; |
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case "exception": |
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$pass_sql = 4; |
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break; |
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} |
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$sqlParameters = array($report_id,$itemized_test_id,$numerator_label); |
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if ($pass == "all") { |
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$sql_where = " WHERE `report_itemized`.`pass` != 3 AND `report_itemized`.`report_id` = ? AND `report_itemized`.`itemized_test_id` = ? AND `report_itemized`.`numerator_label` = ? "; |
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} elseif ($pass == "fail") { |
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$exlPidArr = array(); |
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$exludeResult = collectItemizedPatientsCdrReport($report_id, $itemized_test_id, 'exclude', $numerator_label, false, $sqllimit, $fstart); |
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foreach ($exludeResult as $exlResArr) { |
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$exlPidArr[] = $exlResArr['pid']; |
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} |
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$sql_where = " WHERE `report_itemized`.`report_id` = ? AND `report_itemized`.`itemized_test_id` = ? AND `report_itemized`.`numerator_label` = ? AND `report_itemized`.`pass` = ? "; |
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|
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if (count($exlPidArr) > 0) { |
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$exlPids = implode(",", $exlPidArr); |
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$sql_where .= " AND patient_data.pid NOT IN(" . add_escape_custom($exlPids) . ") "; |
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} |
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|
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array_push($sqlParameters, $pass_sql); |
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} else { |
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$sql_where = " WHERE `report_itemized`.`report_id` = ? AND `report_itemized`.`itemized_test_id` = ? AND `report_itemized`.`numerator_label` = ? AND `report_itemized`.`pass` = ? "; |
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array_push($sqlParameters, $pass_sql); |
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} |
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$sql_query = "SELECT " . $given . " FROM `patient_data` JOIN `report_itemized` ON `patient_data`.`pid` = `report_itemized`.`pid` " . $sql_where . " ORDER BY " . $orderby; |
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|
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if ($sqllimit != "all") { |
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$sql_query .= " limit " . escape_limit($fstart) . ", " . escape_limit($sqllimit); |
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} |
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|
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if ($count) { |
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$rez = sqlQueryCdrEngine($sql_query, $sqlParameters); |
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return $rez['total_listings']; |
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} else { |
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$rez = sqlStatementCdrEngine($sql_query, $sqlParameters); |
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// create array of listing for return |
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$returnval = array(); |
|
for ($iter = 0; $row = sqlFetchArray($rez); $iter++) { |
|
$returnval[$iter] = $row; |
|
} |
|
|
|
return $returnval; |
|
} |
|
} |
|
|
|
/** |
|
* Formats the report data into a format that can be consumed by the twig rendering output. |
|
* @param $report_id The report that we are formatting |
|
* @param $data string json encoded report data retrieved from the database |
|
* @param $is_amc boolean True if this is an AMC report |
|
* @param $is_cqm boolean True if this is an CQM report |
|
* @param $type_report The specific report type (could be a subset of AMC or CQM) |
|
* @param $amc_report_types If an AMC report, the specific AMC report type |
|
* @return array A formatted array of record rows to be used for displaying a CQM/AMC/Standard report. |
|
*/ |
|
function formatReportData($report_id, &$data, $is_amc, $is_cqm, $type_report, $amc_report_types = array()) |
|
{ |
|
$dataSheet = json_decode($data, true) ?? []; |
|
$formatted = []; |
|
$main_pass_filter = 0; |
|
foreach ($dataSheet as $row) { |
|
$row['type'] = $type_report; |
|
$row['total_patients'] = $row['total_patients'] ?? 0; |
|
$failed_items = null; |
|
$displayFieldSubHeader = ""; |
|
|
|
if ($is_cqm) { |
|
$row['type'] = 'cqm'; |
|
$row['total_patients'] = $row['initial_population'] ?? 0; |
|
if (isset($row['cqm_pqri_code'])) { |
|
$displayFieldSubHeader .= " " . xl('PQRI') . ":" . $row['cqm_pqri_code'] . " "; |
|
} |
|
if (isset($row['cqm_nqf_code'])) { |
|
$displayFieldSubHeader .= " " . xl('NQF') . ":" . $row['cqm_nqf_code'] . " "; |
|
} |
|
} else if ($is_amc) { |
|
$row['type'] = 'amc'; |
|
if (!empty($amc_report_types[$type_report]['code_col'])) { |
|
$code_col = $amc_report_types[$type_report]['code_col']; |
|
$displayFieldSubHeader .= " " . text($amc_report_types[$type_report]['abbr']) . ":" |
|
. text($row[$code_col]) . " "; |
|
} |
|
} |
|
|
|
if (isset($row['is_main'])) { |
|
// note that the is_main record must always come before is_sub in the report or the data will not work. |
|
$main_pass_filter = $row['pass_filter'] ?? 0; |
|
$row['display_field'] = generate_display_field(array('data_type' => '1','list_id' => 'clinical_rules'), $row['id']); |
|
if ($type_report == "standard") { |
|
// Excluded is not part of denominator in standard rules so do not use in calculation |
|
$failed_items = $row['pass_filter'] - $row['pass_target']; |
|
} else { |
|
$failed_items = $row['pass_filter'] - $row['pass_target'] - $row['excluded']; |
|
} |
|
$row['display_field_sub'] = ($displayFieldSubHeader != "") ? "($displayFieldSubHeader)" : null; |
|
} else if (isset($row['is_sub'])) { |
|
$row['display_field'] = generate_display_field(array('data_type' => '1','list_id' => 'rule_action_category'), $row['action_category']) |
|
. ': ' . generate_display_field(array('data_type' => '1','list_id' => 'rule_action'), $row['action_item']); |
|
// Excluded is not part of denominator in standard rules so do not use in calculation |
|
$failed_items = $main_pass_filter - $row['pass_target']; |
|
} else if (isset($row['is_plan'])) { |
|
$row['display_field'] = generate_display_field(array('data_type' => '1','list_id' => 'clinical_plans'), $row['id']); |
|
} |
|
|
|
if (isset($row['itemized_test_id'])) { |
|
$csrf_token = CsrfUtils::collectCsrfToken(); |
|
|
|
$base_link = sprintf( |
|
"../main/finder/patient_select.php?from_page=cdr_report&report_id=%d" |
|
. "&itemized_test_id=%d&numerator_label=%s&csrf_token_form=%s", |
|
urlencode($report_id), |
|
urlencode($row['itemized_test_id']), |
|
urlencode($row['numerator_label'] ?? ''), |
|
urlencode($csrf_token) |
|
); |
|
|
|
// we need the provider & group id here... |
|
|
|
// denominator |
|
if (isset($row['pass_filter']) && $row['pass_filter'] > 0) { |
|
$row['display_pass_link'] = $base_link . "&pass_id=all"; |
|
} |
|
|
|
// excluded denominator |
|
if (isset($row['excluded']) && ($row['excluded'] > 0)) { |
|
$row['display_excluded_link'] = $base_link . "&pass_id=exclude"; |
|
} |
|
|
|
// passed numerator |
|
if (isset($row['pass_target']) && ($row['pass_target'] > 0)) { |
|
$row['display_target_link'] = $base_link . "&pass_id=pass"; |
|
} |
|
// failed numerator |
|
if (isset($failed_items) && $failed_items > 0) { |
|
$row['display_failed_link'] = $base_link . "&pass_id=fail"; |
|
} |
|
$row['failed_items'] = $failed_items; |
|
} |
|
|
|
$formatted[] = $row; |
|
} |
|
return $formatted; |
|
}
|
|
|